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Basic and Applied Ecology

Elsevier BV

Preprints posted in the last 30 days, ranked by how well they match Basic and Applied Ecology's content profile, based on 11 papers previously published here. The average preprint has a 0.01% match score for this journal, so anything above that is already an above-average fit.

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Milpa polyculture enhances productivity through crop complementarity and potential carry over effects

Bustos-Segura, C.; Grof-Tisza, P.; Rivera, C.; de Groot, K.; Gonzalez-Salas, R.; Turlings, T. C.; Benrey, B.

2026-08-21 ecology 10.64898/2026.08.17.745153 medRxiv
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Polycultures have long been practiced in traditional agriculture, yet their ecology-based benefits have remained underexplored. Here, under realistic conditions, we experimentally evaluated the productivity and ecological interactions in cultivated milpa, a traditional Mesoamerican polyculture of maize, squash and beans, using a substitutive design in which total plant density was held constant while varying species composition. Specifically, we asked whether productivity gains arose through complementary or selection effects, and whether these gains were associated with changes in arthropod communities and herbivory. We additionally evaluated whether prior cultivation influenced maize performance in the following season. Milpa plots produced significantly higher total yields, more than 2.6 times those of monocultures, despite poor bean performance. In particular, squash and maize equivalent yields increased approximately threefold. We found that these improvements were mainly explained by complementary effects rather than selection effects. Arthropod communities responded in species-specific ways to crop diversity, with predator abundance tracking herbivore presence. However, no consistent patterns emerged between herbivore load, predator abundance and plant damage, suggesting that belowground plant interactions may play a more important role than top-down herbivore control in explaining complementarity effects. In the following season, maize yield increased by [~]30% in plots previously planted with squash or beans, with milpa plots showing intermediate responses. These findings demonstrate that milpa can substantially enhance productivity while generating benefits that extend into the advantages and soil into the following growing season. Overall, our results suggest that complementarity among crops is the primary driver of productivity in milpa under low-input conditions.

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Plant-pollinator interactions along an elevational gradient in Central European forest understorey

Sounapoglou, A.; Janecek, S.; Sakhalkar, S. P.; Kobe, I. N.; Chmelova, E.; Anyz, D.; Delabye, S.; Filip, J.; Hodecek, J.; Jackwerth, K.; Piplova, R.; Hanzelkova, K.; Krizek, T.; Klomberg, Y.; Mertens, J. E. J.; Tropek, R.

2026-08-20 ecology 10.64898/2026.08.15.745048 medRxiv
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Elevational gradients provide a framework for understanding how environmental filtering reorganises communities and interactions, but plant-pollinator interactions along temperate forest elevational gradients remain overlooked. We studied early-spring understorey communities at four forest sites spanning the foothills towards the timberline (450-1,000 m a.s.l.) in the Krkono[s]e Mountains, Czechia. Across six transects per elevation, we quantified flowering plant species richness, floral resources and traits, and video-recorded flowers, yielding 4,003 pollinator visits. We analysed elevational patterns in species richness, community composition, floral traits, and quantitative network characteristics. Visitation frequency and flowering plant and pollinator species richness peaked at intermediate elevations. The contribution of dipteran relative to hymenopteran pollinators increased towards higher elevations, principally because of non-hoverfly flies, whereas individual bee groups showed no uniform response. Floral resources and traits showed no uniform elevational responses, although total nectar sugar availability peaked at the highest site because of the dominant Vaccinium myrtillus. Most notably, both network-level specialisation and mean species-level specialisation were generally greater at the two higher elevations, whereas nestedness was lower and other network characteristics showed no consistent patterns. These findings suggest that shifts in pollinator composition and dominant floral resources potentially shaped interactions along the gradient. The increasing specialisation with elevation contrasts with the generalisation often expected under reduced partner availability and indicates that forest networks may follow elevational patterns not predicted from open habitats. Despite limited site-level replication, this study provides, to our knowledge, the first community-wide characterisation of plant-pollinator interactions along a temperate forest elevational gradient and identifies patterns requiring evaluation across replicated gradients.

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Hydropeaking intensity alters riparian seed bank composition and self-restoration potential

Nordström, E.; Rosbakh, S.; Hoppenreijs, J. H. T.

2026-08-19 ecology 10.64898/2026.08.15.745034 medRxiv
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Flow regulation for hydropower production affects stream ecosystems through decreased connectivity and changed timing and magnitude of flows. Hydropeaking, a form of regulation in which infrequent large peak flows are replaced with frequent small peaks, increases riparian erosion and causes water and drought stress for riparian vegetation. Hydropeaking is likely to affect soil seed bank (SSB) formation and composition, while SSBs are important sources of self-restoration should a systems flow regulation be relaxed. We tested how hydropeaking intensity affects the size and composition of SSBs, including the functionally important group of large graminoids, and by calculating Ellenberg values for Moisture, Light and Soil disturbance. SSB samples were taken at 15 riparian zones across central and northern Sweden. Each site was regulated, but sites differed in their hydropeaking intensities. SSBs were subjected to a seedling emergence experiment, from which over 700 seedlings from 53 taxa emerged. We found that hydropeaking intensity affects the composition of soil seed banks on multiple levels. Seedling density was negatively correlated with hydropeaking intensity at the sites where samples were taken. SSB richness varied (two to eighteen species per site) and was not affected by hydropeaking intensity. The proportion of large graminoids in the seed bank showed a near-significant decrease with increasing hydropeaking intensity, and community-weighted means for Moisture, Light and Soil disturbance increased (non-significantly) with increasing intensity. Our results suggest that riparian SSBs, should flow regulation be relaxed or ceased, are not sufficient for self-restoration of functional riparian vegetation. Seeds of large graminoids and species that are tolerant to drought in the germination stage are less present in riparian SSBs of heavily-regulated streams. Supply of seeds of these groups, or even planting, may need to be considered when changes in flow management are implemented. HighlightsO_LIHydropeaking negatively affects riparian soil seed banks (SSBs) in Sweden C_LIO_LISSB size slightly decreases with hydropeaking intensity, but richness does not change C_LIO_LIThe proportion of large graminoid seeds in SSBs decreases with hydropeaking intensity C_LIO_LIRiparian SSBs from less-impacted sites have most potential for self-restoration C_LI

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The Role of Arthrobacter pascens 13LEP5 in mitigating Drought and Cold stress in Soybean (Glycine Max (L.) Merr.)

Jamil, Y.; Kaziuniene, J.; Colla, G.; Ramoskaite, S.; Toleikiene, M.

2026-08-09 ecology 10.64898/2026.08.03.742660 medRxiv
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Drought and low temperatures are major abiotic factors affecting key physiological and biochemical processes and limiting the yields of soybean (Glycine max L. Merr.). To in-crease soybean production in Europe, different agricultural strategies are applied to re-duce abiotic stress, including biostimulants. Therefore, studies on the effectiveness of local strains isolated in Europe are becoming increasingly relevant. In this study two bacterial strains Arthrobacter pascens (AP) and Bradyrhizobium japonicum (BJ) along with plant-derived protein hydrolysate (PH) were analysed with soybean plans under abiotic stress conditions in plant growth chambers. Six treatments (control; AP; BJ; PH; BJ+AP; BJ+AP+PH) were tested to evaluate biostimulation effect before stress induction (VC stage) and to determine stress reduction effect on soybeans after plants recovery period (V3 stage). Biostimulants application has positive effect on soyabean biometric parameters in early plant development stage and post stress periods. More stable long-term effect was found on structural plant development parameters, than on pigment accumulation. The best results on plant biometric parameters were found where (AP) and (BJ+AP+PH) com-bination was inoculated. (BJ+AP+PH) combination was the only effective treatment, which showed significantly different results in pigments indices, compared to the control, after stress period. Author summaryYasha Jamil: Conceptualization, Data curation, Formal analysis, Writing- original draft, Giuseppe Colla: Formal analysis, Writing- original draft, Writing- review & editing, Justina Kaziuniene: Data curation, Formal analysis, Sarune Ramoskaite :Writing- review & editing. Monika Toleikien[e]: Conceptualization, Data curation, Formal analysis, Writing- original draft, Funding acquisition, Supervision, Writing- review & editing.

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What Determines the Success of Restoring the Threatened African Savanna Mahogany (Khaya senegalensis) Beyond Seed-Tree Size? A Multi-Model Test of Site and Maternal-Origin Effects

ADJI, B. I.; Akaffou, D. S.

2026-08-13 ecology 10.64898/2026.08.12.744298 medRxiv
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Khaya senegalensis (Desr.) A. Juss., the West African savanna mahogany, is listed as Vulnerable on the IUCN Red List due to prolonged commercial and medicinal overexploitation, compounded by failing natural regeneration amid growing deforestation and climate change. Restoration strategies generally rest on the implicit assumption that rigorous selection of seed trees based on their size improves offspring quality. Yet this assumption has never been confronted with the competing hypothesis of a determinism dominated by the planting site, using statistical approaches of adequate power. This study tests the relative contribution of seed-tree dendrometric characteristics (diameter, height) and planting site to germination and juvenile growth (6-24 months) of K. senegalensis, using six complementary analytical approaches: continuous regression, linear mixed models with site x seed-tree interaction, seed-mass mediation analysis, non-linear growth-trajectory modelling, between-site phenotypic plasticity indices, and multi-predictor allometric equations, across two contrasting bioclimatic sites in Cote dIvoire (Korhogo: Sudanian savanna, and Daloa: humid forest) and six seed-tree categories. Converging across all these approaches, the results show that the planting site exerts a decisive influence on germination (71.1% at Korhogo versus 63.9% at Daloa; {chi}{superscript 2} = 6.09; p = 0.014) and on the entire growth trajectory (p < 0.001), whereas no seed-tree characteristic affects offspring performance, whether in continuous regression (p > 0.37), mixed models with interaction (p > 0.29), or through a seed-mass mediation pathway (Sobel test, p = 0.46). An exponential growth model fits better than linear or power-law models ({Delta}AIC = 13.6-14.7 depending on site), and multi-predictor allometric equations (diameter and height) explain 97.4% of the variance in total biomass, versus 94.8% for the single-predictor model. These convergent results indicate that, contrary to the widespread practice of selecting seed trees on size criteria, it is the choice of planting site that truly determines the success of restoring this vulnerable species. A conclusion calling for a reorientation of priorities in reforestation and agroforestry programmes across West Africa.

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Soil microbial inoculants augment fertilizer performance across contrasting cropping systems in Rwanda

Hansen, P. M.; Edlund, A.; Bukombe, B.; Grama, A.; Mberwa, J. W.; Makhalanyane, T. P.; Jansson, J. K.; Crowther, T. W.; Gilbert, J. A.

2026-08-28 ecology 10.64898/2026.08.27.747552 medRxiv
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Smallholder farming systems in sub-Saharan Africa are constrained by declining soil fertility, erosion, and rising fertilizer costs, creating an urgent need for scalable inputs that sustain yields while maintaining soil health. While there is some evidence that microbial inoculants may offer a promising complement to conventional fertility management, field-scale evidence in tropical cereal and tuber systems remains limited. Here, we evaluated a multi-species inoculant composed of 20-22 Bacillus and Streptomyces species on potato and maize across four sites in Rwanda over two growing seasons (2025A and 2025B). Treatments included the inoculant applied at two rates (150 and 250 g ha-1), both alone and in combination with standard fertilization (inorganic fertilizer plus manure), alongside untreated and fertilized controls. Co-application of the inoculant with standard fertilization increased yield and plant biomass beyond fertilization alone, with gains of 6-51% for maize and 3-58% for potato. However, while the inoculant applied alone outperformed untreated controls, it generally did not match standard fertilization. Responses were strongest and most consistent for large-grade potato tubers, and application rate interacted with crop type, whereby the lower dose maximized marketable tuber yield, while maize showed a positive dose-response for grain and biomass. Yield increases were not accompanied by reductions in crop nutrient density, which was instead governed by site-level differences. Altogether, these results indicate that multi-species microbial inoculants are an effective complement to existing fertility practices that may offer, pending further research, a potential pathway to partial fertilizer replacement while sustaining productivity and nutritional quality in smallholder tropical agriculture.

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Deadwood-related microhabitats in old-growth forests in Poland

Przepiora, F.; Ciach, M.

2026-08-13 ecology 10.64898/2026.08.12.744401 medRxiv
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Deadwood is a fundamental component of forest ecosystem, supporting biodiversity and driving multiple ecological processes. However, structures that may develop on downed coarse woody debris (CWD) create additional microhabitats that are used by numerous organisms and contribute to small-scale habitat heterogeneity. To date, quality of CWD is commonly characterized by its volume, diameter, tree species or stage of decomposition, while fine-scale structures occurring there remain not surveyed and their role in ecosystem is rarely quantified. Here, we introduce the novel concept of microhabitats on CWD. i.e. Deadwood-related Microhabitats (DreMs), defined as distinct features occurring on CWD that may provide shelter, breeding or foraging sites for forest-dwelling organisms. Using an original catalogue comprising 14 groups and 30 types, we inventoried DreMs on 6,003 CWD across 423 study plots located in best-preserved old-growth forests in Poland. We quantified the frequency and richness of DreMs and assessed the link between CWD characteristics and DreM richness in spruce, beech, willow-poplar, fir-beech and oak-lime- hornbeam forests. All inventoried DreMs occurred on both deciduous and coniferous taxa. The most frequent DreM included bryophyte mats, loose bark patches, insect galleries, fungal fruiting bodies and polypores. DreM richness increased with CWD diameter, more complex architecture and the presence of multiple decay classes within single debris. DreM richness peaked at intermediate decay classes and was higher on deciduous than on coniferous taxa. Our study is the first large-scale qualitative and quantitative assessment of DreMs in temperate forests. By focusing on forests characterized by ecological continuity and minimal human-related disturbance, the results provide a reference for downed deadwood-associated structures. By complementing inventory of tree-related microhabitats, DreMs extend potential monitoring schemes of habitat quality and contribute to biodiversity-oriented forest management. Highlights* Downed coarse woody debris (CWD) hosts Deadwood-related microhabitats (DreMs) * Higher DreM richness is associated with CWD diameter * DreM richness peak at intermediate stages of wood decay * CWD of deciduous taxa support more DreMs than coniferous * Diversified CWD and DreMs increase habitat heterogeneity for forest-dwelling taxa

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Generalism vs. specialization: Does niche breadth influence species responses to anthropogenic land-use change in Neotropical leaf-cutter ants?

Garcia Castillo, D.

2026-08-17 ecology 10.64898/2026.08.12.744409 medRxiv
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Land-use change, such as the transformation of woody ecosystems into open pastures, acts as a strong ecological filter, favouring some species while excluding others according to differences in ecological niche breadth. Understanding how differences in niche breadth influence species responses under anthropogenic filters is crucial to anticipate their persistence or displacement. In this study, we quantified realized niche breadth in two sympatric ecosystem engineers, the Neotropical leaf-cutter ants Atta cephalotes and Atta laevigata, to test whether breadth differences are consistent with specialist and generalist ecological strategies. We characterized realized niche breadth across fine-scale environmental gradients by integrating hemispherical photography, microclimatic data, mound architecture, and edaphic profiles from 114 colonies across a regional transect in the Colombian Andes, alongside macroclimatic data from Copernicus. Principal Component Analysis (PCA) and PERMANOVA identified canopy openness and bushes- and tree-type vegetation density as the principal axes of interspecific niche partitioning. The observed differences in realized niche breadth were consistent with specialist and generalist ecological strategies. A. laevigata was predominantly associated with open-canopy areas, warmer micro- and macroclimatic conditions, and narrower edaphic dispersion. In contrast, A. cephalotes occupied a wider range of microhabitat conditions. This broader realized niche breadth is compatible with previous reports of A. cephalotes occurring in urban areas. Together, these findings suggest that niche breadth may influence how Neotropical leaf-cutter ants respond to habitat transformation, helping to understand the ecological consequences of land-use change.

9
Local nutrient hotspots shape red deer habitat selection in a nutrient-poor landscape

Wenting, E.; van den Braak, M.; Vervoorn, C.; Luten, H.; Vermeer, R.; Lammertsma, D. R.; Snijders, L.; Bakker, E. S.; Kölzsch, A.

2026-08-21 ecology 10.64898/2026.08.17.745224 medRxiv
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Nutrient availability in many temperate ecosystems is shaped by soil properties and historical land use. Especially in otherwise nutrient-poor landscapes human-induced, local fertilisation can generate fine-scale mosaics of nutrient hotspots. Whether and how large herbivores respond to such heterogeneity remains poorly understood. We tested whether spatial variation in soil-derived nutrient availability structures habitat selection by large herbivores, using full-year GPS tracking data from 7 red deer (Cervus elaphus) in the Veluwe, the Netherlands. We used soil types as a proxy for nutrient availability and assigned nutrient scores based on soil pH, cation exchange capacity and soil structure. We then evaluated habitat selection across multiple components of space use: (i) home range size; (ii) use of relatively nutrient-rich parts within home ranges; (iii) selection among soil types; and (iv) selection of locally enriched former agricultural patches. Red deer used relatively nutrient-rich within their home range more than expected based on availability, including local patches enriched by former agricultural use. However, site selection did not consistently follow nutrient scores among soil types. These results show that nutrient availability does shape habitat selection, but primarily through fine-scale, localised nutrient enrichment rather than broad-scale variation in soil properties. Our findings demonstrate that nutrient-related foraging contributes to habitat selection in a large wild herbivore, while also revealing that this process is scale- and context-dependent. By repeatedly concentrating their foraging in nutrient-rich patches, large herbivores may contribute to nutrient redistribution across the landscape, with the potential to reinforce or modify existing spatial heterogeneity in resource availability and ecosystem functioning.

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A novel approach to incorporate compound dissimilarity to plant chemodiversity measures using UV-Vis spectra

Aragam, K. S.; Steppuhn, A.

2026-08-25 ecology 10.64898/2026.08.24.746705 medRxiv
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1. Since plants interact with their environment through complex combinations of phytochemicals rather than metabolites in isolation, quantifying plant chemodiversity is of increasing interest. Although functionally relevant, structural disparity is mostly neglected in measures of chemodiversity because its integration relies on known compound identity, limiting broad application. 2. We established an approach deriving compound dissimilarity from UV-Vis spectra in HPLC-DAD datasets, evaluated how it relates to structure- or biosynthesis-based approaches, and examined whether it provides meaningful contributions to chemodiversity measures. For this, we applied it in an experiment full-factorially testing the effects of drought and herbivory on Solanum dulcamara leaf chemodiversity. 3. UV-Vis spectral dissimilarity aligned well with fMCS-based structural dissimilarity and reflected structural relationships within a set of standards. Incorporating it into chemodiversity analysis improved separation of the effects of drought and herbivory. Especially in the combination of both stresses, their distinct effects on different leaf metabolites were only fully reflected when accounting for compound disparity. 4. Hence, UV-Vis spectral dissimilarity captures chemically meaningful compound relatedness without requiring compound identity. Using it as a proxy for compound disparity adds a biologically relevant dimension to measures of chemodiversity with broader implications when assessing functional consequences of phytochemical diversity.

11
Widespread collapse in Iberian forest site productivity projected under future climate change

Fernandez-Pastor, M.; Rodriguez-Ruiz, G.; Monjo, R.; del Carre, M.; Hernandez-Parada, A. I.; Prado-Lopez, C.; Garcia-Valdes, R.; Redolat, D.; Moreno-Chacon, E.; Ribaylagua, J.

2026-08-10 ecology 10.64898/2026.08.07.743474 medRxiv
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AimHere we aim to disentangle species-specific bioclimatic drivers of forest site productivity and project their future dynamics, providing a spatially explicit basis for anticipating climate-driven shifts in productivity and their implications for forest carbon sequestration. LocationIberian Peninsula. Time period1985-2014 (calibration); 2071-2100 (projected under CMIP6 scenarios). Major taxa studied21 Iberian tree species. MethodsWe used Site Form (SF) maps derived from the Third Spanish National Forest Inventory, spatially interpolating plot-level SF estimates as a continuous productivity index and relating them to 25 bioclimatic variables. Multiple linear regression models were selected via complementary stepwise and subset regression and validated on independent hold-out data (80%/20% split). ResultsValidated [Formula] ranged from 0.46 (Quercus faginea) to 0.97 (Pinus pinaster); 17 of 21 species reached [Formula]. BI013 precipitation of the wettest month), not BI014, was the most frequently retained predictor (15/17); BI014 was retained in only (11/17 models with a near-even sign split. Combining projected changes in mean productivity and habitat extent under SSP5-8.5, fifteen of sixteen applicable species lose total productivity by 2071-2100, six -- including Fagus sylvatica and Betula alba -- collapsing to below 1% of their reference-period value; only Pinus pinaster gains, and only under the lowest-emission pathway (up to 175%) -- under SSP5-8.5 it too loses productivity, albeit less than any other species (35% of its reference-period value retained). Limiting warming to SSP1-2.6 spares Mediterranean pine and oak species but not Euro-Siberian and montane ones. Main conclusionsThese validated, extrapolation-aware models reveal a near-universal, climate-driven collapse in Iberian forest site productivity, with direct implications for the carbon-sink potential currently attributed to these forest types, and provide a route to dynamic, climate-aware carbon-uptake estimates for the region.

12
Decoupling environmental suitability from realized recruitment through ontogenetic environmental filtering in a long-lived Mediterranean palm species

Cordero, S.; Perez, F. R.; Acuna-Molina, R.; Contreras-Vera, Y.; Jorquera-Fonck, T.; Gongora-Vasquez, F.; Gonzalez-Ramos, B.; Nunez, J. P.; Rosello, I.; Sepulveda-Vasquez, A.; Vergara, M. A.; Fonturbel, F. E.

2026-08-21 ecology 10.64898/2026.08.17.745352 medRxiv
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Long-lived plants facing anthropogenic disturbance often exhibit recruitment failure despite persistent reproductive adults, generating extinction debt masked by longevity. However, whether adult presence reliably reflects environmental suitability for recruitment remains unclear. Here, we examine ontogenetic niche differentiation and its consequences for recruitment in Jubaea chilensis, an endangered long-lived Mediterranean palm with an aging population. We assigned individuals within the largest known population to four ontogenetic stages and characterized their environmental niches using climatic, edaphic, topographic, and vegetation variables. We then applied spatial and multivariate analyses, including Random Forest models to evaluate environmental segregation and identify predictors of seedling establishment. Age classes occupied significantly different environmental niches, with the greatest differentiation between seedlings and reproductive adults. Saplings and adult differentiation reflected mainly topographic variables at landscape scale, whereas seedling establishment was primarily predicted by microhabitat conditions (vegetation cover heterogeneity, east-facing slope orientation, and soil texture). This pattern is consistent with niche reconfiguring throughout the life cycle, suggesting that adult occurrence and recruitment suitability respond to distinct environmental conditions. Over one-fifth of sampled individuals occupied high-suitability sites without recruitment, suggesting that ontogenetic niche shifts are associated with a spatial decoupling between adult persistence and recruitment, consistent with demographic collapse independent of habitat degradation. This failure is likely mediated by insufficient effective seed dispersal, as the sole disperser (Octodon degus) preys on most seeds before dispersal. Conservation strategies based solely on adult distribution may therefore overestimate effective habitat and underestimate extinction risk in long-lived species.

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Infrared imaging supports warming effects of anthocyanin pigments in flowers of diverse plant taxa

Hughes, N.; Campbell, J. W.; Ragan, E. D.; Forte, S. J.; West, N. M.

2026-08-10 ecology 10.64898/2026.08.07.743445 medRxiv
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Flower color has primarily been studied in the context of pollinator attraction, although effects on thermal energy balance are also important, especially in the context of global climate change. We used infrared imaging to compare petal temperatures of white versus pigmented cultivars of ten angiosperm taxa under controlled environmental conditions. Excised sets of flowers (n= 6 sets per species) exhibiting white, light, and/or dark anthocyanin (red to purple) coloration were mounted perpendicularly to the sun at mid-day, under clear sky, low wind (<1 m s-1) conditions. Sunlight was filtered through either UV-transparent or UV-opaque film, and petal temperatures were measured using an infrared camera after one minute equilibration. In all species, pigmented flowers were significantly warmer than lighter-colored conspecifics. Mean differences averaged +5.3{degrees}C for darker-colored versus white morphs, +2.9{degrees}C for lighter-colored versus white. Most warming was associated with visible wavelengths, but additional warming under UV-inclusion was also observed in some species. In situ observations of intact landscape plants under low-wind, high-light conditions corroborated experimental results, with differences exceeding 10{degrees}C observed in some taxa. Temperature differences >7{degrees}C were also recorded for purple versus white sections of the same flower in multicolored Viola and Petunia cultivars. Follow-up experiments using dark-pink and white varieties of Impatiens x hybrida corroborated well-known effects of sunlight intensity and wind speed on floral temperatures, helping to explain inconsistent reports in the literature. Our results clearly demonstrate that anthocyanin pigments can have significant and dramatic impacts on floral temperatures, which could be an important factor driving evolution of flower color. In the context of climate change, floral pigments could amplify the effects of rising global temperatures, negatively impacting plant reproduction and crop yields, especially on the warmer end of species ranges. Changes in flower color could also potentially induce shifts in pollinator communities, which could have community-scale effects.

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Water depletion can generate contrasting root allocation responses to belowground competition

Cabal, C.; Chico Rodriguez, M.

2026-08-11 ecology 10.64898/2026.08.09.743548 medRxiv
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Plants competing belowground may produce extra roots, fewer roots, or no detectable change compared to plants growing alone. This inconsistency is often attributed to plants altering their root allocation in response to diverse cues, including neighbor detection and resource depletion by neighbors, but isolating these cues experimentally is challenging. Here, we hypothesize that water depletion alone can generate the range of root allocation strategies reported in the literature. We present this hypothesis as a water-explicit optimization model of root allocation that predicts a non-monotonic response. The model identified a critical depletion rate at which allocation shifted from increasing to decreasing with depletion. We tested this prediction using artificially rooted pots that imposed controlled water depletion while excluding living neighbors and their cues. A continuous artificial depletion gradient revealed the predicted hump-shaped pattern. These results reframe root overproliferation and underproliferation as positions along a single depletion-response curve.

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TreeTOP: Plant experimental platforms in canopy space

Baumeister, J.; Bakhtiari, M. M.; Schreiber, M.; Eisenring, M.; Gossner, M.; Walden, S.; Becker, A.; Bouffaud, M. L.; Cesarz, S.; Dauphin, B.; Eisenhauer, N.; Goldmann, K.; Heidrich, L.; Jurburg, S.; Junker, R. R.; Kreuzwieser, J.; Lampei, C.; Nauss, T.; Peter, M.; Prada-Salcedo, L.; Tarkka, M.; Werner, C.; Zeuss, D.; Herrmann, S.; Buscot, F.; Heer, K.; Opgenoorth, L.

2026-08-31 ecology 10.64898/2026.08.30.748063 medRxiv
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1. Forest canopies harbour strong microclimatic gradients that shape plant performance, species interactions and ecosystem processes. Yet, despite renewed interest sparked by global change, forest canopies remain difficult-to-access experimental spaces. 2. With the goal to expand access to tree canopies as experimental arenas, we designed, built, and tested TreeTOP, a standardized experimental platform that opens canopy space for manipulative ecological experiments, specifically with potted plants. TreeTOP features lightweight aluminum frames placed in mature tree canopies non-invasively, allowing potted plants to be placed in three different heights, ground level, shade canopy, and sun canopy. 3. We implemented TreeTOP using two contrasting infrastructure concepts to demonstrate its applicability in both highly equipped canopy research facilities and forests without permanent canopy infrastructure. One installation relied on a canopy crane, grid power and fully automated irrigation, whereas the second was built by certified tree climbers and was equipped with an autonomous solar-powered, battery-operated irrigation system. At both sites, environmental sensor networks monitor the experiment. 4. TreeTOP successfully reproduced characteristic canopy microclimatic gradients, including increasing light availability, daytime air temperatures and thermal extremes with canopy height. Despite differing infrastructures, both implementations generated comparable microclimatic patterns, demonstrating that standardized canopy experiments are feasible in forests with or without permanent canopy access. By opening canopy space for manipulative experiments, TreeTOP provides a transferable framework for investigating plant performance, phenology, species interactions and microbiome assembly under realistic forest conditions.

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A qPCR method facilitates study of absolute abundance, ecology, and inoculation fate of ciliate predators on the leaf surface

Taerum, S. J.; Patel, R. R.; Steven, B.; Triplett, L. R.

2026-08-21 microbiology 10.64898/2026.08.14.744910 medRxiv
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Predatory protists are important in shaping terrestrial microbial ecosystems, but their roles in the phyllosphere, or the communities on aerial plant surfaces, are poorly understood. Previous work found that the order Colpodida dominated heterotrophic protist communities in the phyllosphere. While most protists were sporadically present, a few Colpodida variants were prevalent and abundant, indicating that these variants may represent species adapted to the phyllosphere. To identify these organisms, we cultured colpodids from field-collected tomato leaves and performed phylogenetic analysis of the 18S rRNA gene. Five of nine independent isolates matched the most prevalent Colpodida variant previously identified as leaf-enriched through amplicon sequencing, and these isolates comprised a novel clade of Paracolpoda steinii. When compared to a maize root isolate of Colpoda inflata, an abundant rhizosphere ciliate, a P. steinii isolate was similar in size and growth yield on E. coli, but grew to higher yields and formed large cyst clusters when incubated with model phyllosphere bacteria prey Erwinia and Pseudomonas. We developed and validated quantitative PCR (qPCR) methods for detection and cell abundance estimation of the P. steinii phyllosphere clade, C. inflata, and the order Colpodida in environmental samples. In inoculated greenhouse plants, qPCR-estimated protist populations matched measured inoculum levels, and protist inoculum was still detectable after five days. In an uninoculated tomato field, P. steinii was detected on all plants, with greatest abundances observed in lower leaves and after a rain event. P. steinii comprised up to 18.7% of total leaf Colpodida populations, which were estimated at up to [~]1400 organisms per gram of fresh weight. The findings demonstrate that Colpodida communities are consistently present on tomato leaves, dynamically affected by the abiotic environment, and include significant populations of P. steinii. We propose that the P. steinii isolates and qPCR tools presented can be used as a model system to investigate colonization and distribution patterns, biotic interactions, genetic adaptations, and agricultural applications of leaf predation.

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Classifying and Mapping Wetland Vegetation Assemblages in Coastal Louisiana with Landsat Imagery, 1985-2025

Snedden, G. A.; Couvillion, B.; Schoolmaster, D. R.

2026-08-18 ecology 10.64898/2026.08.13.744705 medRxiv
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The tidal wetlands of Louisiana comprise about 25% of those found throughout the conterminous United States yet estimates of wetland loss rates in the region between 1932 and 2016 have exceeded 60 km2 yr-1. To mitigate further degradation and wetland loss in the region, a globally unprecedented $50B, 50-year plan for coastal Louisiana is driving restoration efforts, and demand exists from multiple stakeholders for regularly updated, regional-scale, accurate land cover information. We used machine learning (random forests; RF) and cloud computing to develop a new Landsat-based, marsh vegetation community geospatial dataset. The dataset depicts wetland vegetation community types defined in a previous study at annual (1985-2025) time steps at 30-m resolution. An RF algorithm was used to integrate training samples with feature variables derived from Landsat imagery, and the resulting geospatial data product achieved an overall correct classification rate of 78%. The approach for development of the land cover dataset presented here has potential for application in other coastal wetland habitats throughout the world.

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Annual ploughing turns wildflower plantings into ecological traps for ground-nesting wild bees

Hellerich, C.; Klein, A.-M.; Garratt, M.; Mupepele, A.-C.; Fornoff, F.

2026-08-26 ecology 10.64898/2026.08.25.746958 medRxiv
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Wildflower plantings are an important conservation measure for supporting wild bee diversity. They aim to enhance floral resources for nutrition, but do not explicitly consider that bees also require suitable nesting and overwintering resources. Wildflower plantings may provide nesting habitat for ground-nesting bees, but the effects of soil management, e.g. ploughing, on ground-nesting bees are hardly known. To study how ploughing and age of wildflower plantings affect ground-nesting bees, we sampled bees on ploughed and unploughed wildflower plantings aged 0-4 years. We used emergence traps to sample bees directly after emergence from the ground, allowing inference on nest numbers. We found that ploughing and wildflower planting age negatively affected overwintering bee nest numbers. Nesting peaked in the year of wildflower planting establishment and declined thereafter, indicating lower habitat suitability at later successional stages. Annual ploughing caused the greatest reduction in nest numbers (-72 %), providing evidence for an ecological trap.

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A Natural-History Study of Reproductive Scaling and Clonality in Co-Occurring Catopsis Griesb.

Felton, J. M.; Escalante, K. T.; Cayetano, D. T.; Mendez, K. D.; Specht, C. D.

2026-08-13 plant biology 10.64898/2026.08.12.742214 medRxiv
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AO_SCPLOWBSTRACTC_SCPLOWMulti-species communities of epiphytic bromeliads are a defining component of Neotropical canopies, yet we have little knowledge of how closely related species differ in the balance struck among vegetative growth, clonal propagation, and sexual reproduction. We compared reproductive output, clonality, and sexual systems in sympatric populations of Catopsis nutans (Sw.) Griseb. and Catopsis sessiliflora (Ruiz & Pav.) Mez occupying citrus groves in central Belize, sampling 235 reproductively mature individuals across 138 host trees in nine groves. Reproductive output, measured as the count of reproductive structures per individual, was modeled with negative binomial generalized linear mixed models that accounted for vegetative size and host tree identity. All sampled C. nutans were hermaphroditic, whereas all C. sessiliflora were unisexual, representing a dioecious population. Reproductive output increased with vegetative size in both species, and the scaling relationship did not differ between them despite their differing sexual systems. After accounting for size, C. sessiliflora produced more reproductive structures and more connected pups than C. nutans, and we found no evidence of a trade-off between clonal and sexual output in both species. Within C. sessiliflora, staminate individuals produced more flowers than pistillate individuals across comparable sizes. Co-occurring Catopsis can differ markedly in baseline reproductive and clonal output while sharing a conserved scaling of output on vegetative size, offering a foundation for further comparisons of sex-specific reproductive allometry in bromeliads.

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Metagenomic analysis of the effects of European bison Bison bonasus (Linnaeus, 1758) presence on soil community structure and function in West Blean and Thornden Woods, Kent

Xu, C.; Schalkwyk, H. V.; Powell, O.; Gustave, C.; Ball, L.; Ross, K.; Murray, E.; Aguirregoicoa, H.; Mackins, H.; Swinnerton, K.; Creedy, T. J.; Sivess, L.; Jones, J.; Castillo, K.; Bleet, R.; Salatino, S.; Mendis, Y.-T. C.; Lebre, P.; Mkrtchyan, H.; Cuber, P.

2026-08-20 ecology 10.64898/2026.08.19.745704 medRxiv
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The reintroduction of extinct or endangered species to restore ecosystem function is an essential aspect of rewilding. The Wilder Blean Project at West Blean and Thornden Woods in Canterbury, UK, is committed to rewilding natural processes and enhancing biodiversity in one of England's oldest and largest areas of ancient woodland. The introduction of European bison (Bison bonasus) is an important part of the project. However, how the reintroduction of large herbivores influences local biodiversity and ecosystem functions during the early stages of rewilding remains poorly understood. Soil samples were collected from the same sampling sites before and two years after bison were reintroduced and profiled by metagenomic sequencing using Oxford Nanopore Technologies sequencing platforms. The results showed that the alpha diversity of soil organisms did not change significantly before and after the introduction of European bison, while beta diversity showed modest shifts in community composition. The relative abundance of some nitrogen-fixing and photosynthetic microbial genera showed declines in the 2024 Bison Area, while the mycorrhizal fungus genus Rhizophagus was significantly less abundant than in the 2024 Control Area. Despite relatively stable taxonomic diversity, functional composition differed significantly between the 2022 and 2024 Bison areas and among the 2024 rewilding treatments, revealing a decoupling between taxonomic diversity and functional composition. Amino acid synthesis pathways and carbon metabolism pathways were significantly enriched. These findings highlight the potential of long-read Oxford Nanopore metagenomics to reveal functional shifts that may not be apparent from taxonomic diversity alone. Although these early-stage responses cannot yet predict long-term rewilding trajectories, continued longitudinal monitoring integrating microbial, soil physicochemical, and ecosystem-level measurements will be essential to determine the persistence and ecological significance of these functional shifts.